[CIG-MC] cookbook 9 problem

CLINT CONRAD clintc at hawaii.edu
Tue Mar 3 09:10:11 PST 2009


Dear cig-mc help,

I have been trying to run cookbook 9 using the 3.0.3 version of  
citcom. I've compiled citcom with the exchanger,
and then type:
citcoms --coupled cookbook9.cfg
and I get the series of output and error messages that I have pasted  
below.
It seems that this problem has to do with the exchanger, but I've  
compile the exchanger, and when
I run ./configure for citcom, the configuration summary clearly says  
that it is compiled with the exchanger:

================ Configuration Summary ================
	 PYTHON:  /share/data/clintc/opt/bin/python
	 PYTHONPATH:  ${prefix}/lib/python2.4/site-packages:${exec_prefix}/ 
lib/python2.4/site-packages:/share/data/clintc/cig/lib/python2.4/site- 
packages
	 CC:  mpicc
	 CFLAGS:  -g -O2
	 CPPFLAGS:  -DUSE_GZDIR
	 CXX:  mpicxx
	 CXXFLAGS:  -g -O2
	 LDFLAGS:  -lz
	 with-pyre:  yes
	 with-exchanger:  yes
	 with-hdf5:  no

Can you help me figure out what is the problem when I try to run  
cookbook 9? I've pasted the output and error messages from my attempt  
at cookbook9 below.

Thanks very much for your help!

Clint


---------------------------------------------
Clint Conrad              Assistant Professor
Dept. Geology & Geophysics,  SOEST,  804 POST
Univ. Hawaii at Manoa        ph: 808-956-6649
1680 East-West Road         fax: 808-956-5154
Honolulu, HI 96822          clintc at hawaii.edu
http://www.soest.hawaii.edu/GG/FACULTY/conrad
---------------------------------------------


Here is the output and error messages that I get:

[clintc at akua cookbook9]$ citcoms --coupled cookbook9.cfg
Problem has 17 x 25 x 17 nodes
Problem has 21 x 49 x 21 nodes
nz  radius   depth    rho
1 0.550000 0.450000 1.000000e+00
2 0.572500 0.427500 1.000000e+00
3 0.595000 0.405000 1.000000e+00
4 0.615000 0.385000 1.000000e+00
5 0.635000 0.365000 1.000000e+00
6 0.655000 0.345000 1.000000e+00
7 0.675000 0.325000 1.000000e+00
8 0.695000 0.305000 1.000000e+00
9 0.715000 0.285000 1.000000e+00
13 0.795000 0.205000 1.000000e+00
14 0.815000 0.185000 1.000000e+00
15 0.835000 0.165000 1.000000e+00
16 0.855000 0.145000 1.000000e+00
17 0.875000 0.125000 1.000000e+00
10 0.735000 0.265000 1.000000e+00
11 0.755000 0.245000 1.000000e+00
12 0.775000 0.225000 1.000000e+00
13 0.795000 0.205000 1.000000e+00
25 0.775000 0.225000 1.000000e+00
26 0.784333 0.215667 1.000000e+00
27 0.793667 0.206333 1.000000e+00
28 0.803000 0.197000 1.000000e+00
29 0.812333 0.187667 1.000000e+00
nz  radius   depth    rho
1 0.551000 0.449000 1.000000e+00
2 0.560333 0.439667 1.000000e+00
3 0.569667 0.430333 1.000000e+00
4 0.579000 0.421000 1.000000e+00
5 0.588333 0.411667 1.000000e+00
6 0.597667 0.402333 1.000000e+00
7 0.607000 0.393000 1.000000e+00
8 0.616333 0.383667 1.000000e+00
9 0.625667 0.374333 1.000000e+00
10 0.635000 0.365000 1.000000e+00
11 0.644333 0.355667 1.000000e+00
12 0.653667 0.346333 1.000000e+00
13 0.663000 0.337000 1.000000e+00
14 0.672333 0.327667 1.000000e+00
15 0.681667 0.318333 1.000000e+00
16 0.691000 0.309000 1.000000e+00
17 0.700333 0.299667 1.000000e+00
18 0.709667 0.290333 1.000000e+00
19 0.719000 0.281000 1.000000e+00
20 0.728333 0.271667 1.000000e+00
21 0.737667 0.262333 1.000000e+00
22 0.747000 0.253000 1.000000e+00
23 0.756333 0.243667 1.000000e+00
24 0.765667 0.234333 1.000000e+00
25 0.775000 0.225000 1.000000e+00
18 0.895000 0.105000 1.000000e+00
19 0.915000 0.085000 1.000000e+00
20 0.935000 0.065000 1.000000e+00
21 0.955000 0.045000 1.000000e+00
22 0.966250 0.033750 1.000000e+00
23 0.977500 0.022500 1.000000e+00
24 0.988750 0.011250 1.000000e+00
25 1.000000 0.000000 1.000000e+00
30 0.821667 0.178333 1.000000e+00
31 0.831000 0.169000 1.000000e+00
32 0.840333 0.159667 1.000000e+00
33 0.849667 0.150333 1.000000e+00
34 0.859000 0.141000 1.000000e+00
35 0.868333 0.131667 1.000000e+00
36 0.877667 0.122333 1.000000e+00
37 0.887000 0.113000 1.000000e+00
38 0.896333 0.103667 1.000000e+00
39 0.905667 0.094333 1.000000e+00
40 0.915000 0.085000 1.000000e+00
41 0.924333 0.075667 1.000000e+00
42 0.933667 0.066333 1.000000e+00
43 0.943000 0.057000 1.000000e+00
44 0.952333 0.047667 1.000000e+00
45 0.961667 0.038333 1.000000e+00
46 0.971000 0.029000 1.000000e+00
47 0.980333 0.019667 1.000000e+00
48 0.989667 0.010333 1.000000e+00
49 0.999000 0.001000 1.000000e+00
initialization time = 0.304688
Traceback (most recent call last):
   File "<string>", line 1, in ?
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/__init__.py", line 42, in mpistart
     kwds = kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/__init__.py", line 41, in start
     shell.run(**kwds)
Traceback (most recent call last):
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
     method(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
     self.runSubscript(*args, **kwds)
   File "<string>", line 1, in ?
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
     self.subscript.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/__init__.py", line 42, in mpistart
     kwds = kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Application.py", line 42, in run
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/__init__.py", line 41, in start
     shell.run(*args, **kwds)
     shell.run(**kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
     method(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
     method(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
     self.onComputeNodes(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
BaseApplication.py", line 61, in main
     self.runSubscript(*args, **kwds)
     self.initialize()
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
CoupledApp.py", line 71, in initialize
     self.controller.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
     self.subscript.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
Controller.py", line 57, in initialize
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Application.py", line 42, in run
     self.solver.initialize(app)
     shell.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/ 
CoupledSolver.py", line 53, in initialize
     self.coupler.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
ContainingCoupler.py", line 40, in initialize
     method(*args, **kwds)
     Coupler.initialize(self, solver)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
Coupler.py", line 76, in initialize
     from ExchangerLib import initConvertor
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
ImportError: No module named ExchangerLib
     self.onComputeNodes(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
BaseApplication.py", line 61, in main
     self.initialize()
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
CoupledApp.py", line 71, in initialize
     self.controller.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
Controller.py", line 57, in initialize
     self.solver.initialize(app)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/ 
CoupledSolver.py", line 53, in initialize
     self.coupler.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
ContainingCoupler.py", line 40, in initialize
     Coupler.initialize(self, solver)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
Coupler.py", line 76, in initialize
     from ExchangerLib import initConvertor
ImportError: No module named ExchangerLib
Traceback (most recent call last):
   File "<string>", line 1, in ?
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/__init__.py", line 42, in mpistart
     kwds = kwds)
Traceback (most recent call last):
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/__init__.py", line 41, in start
     shell.run(**kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
     method(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
     self.main(*args, **kwds)
   File "<string>", line 1, in ?
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
     self.runSubscript(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
     self.subscript.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Application.py", line 42, in run
     shell.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/__init__.py", line 42, in mpistart
     kwds = kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/__init__.py", line 41, in start
     shell.run(**kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
     method(*args, **kwds)
     method(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
     self.onComputeNodes(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
BaseApplication.py", line 61, in main
     self.initialize()
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
CoupledApp.py", line 71, in initialize
     self.controller.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
     self.runSubscript(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
Controller.py", line 57, in initialize
     self.solver.initialize(app)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
     self.subscript.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/ 
CoupledSolver.py", line 53, in initialize
     self.coupler.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Application.py", line 42, in run
     shell.run(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
EmbeddedCoupler.py", line 49, in initialize
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/pyre/applications/Shell.py", line 142, in run
     method(*args, **kwds)
     Coupler.initialize(self, solver)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
Coupler.py", line 76, in initialize
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
     from ExchangerLib import initConvertor
ImportError: No module named ExchangerLib
     self.onComputeNodes(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7- 
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
     self.main(*args, **kwds)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
BaseApplication.py", line 61, in main
     self.initialize()
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
CoupledApp.py", line 71, in initialize
     self.controller.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/ 
Controller.py", line 57, in initialize
     self.solver.initialize(app)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/ 
CoupledSolver.py", line 53, in initialize
     self.coupler.initialize(self)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
EmbeddedCoupler.py", line 49, in initialize
     Coupler.initialize(self, solver)
   File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/ 
Coupler.py", line 76, in initialize
     from ExchangerLib import initConvertor
ImportError: No module named ExchangerLib
--pyre-start: mpirun: exit 1
/share/data/clintc/citcom/CitcomS/bin/citcoms: /share/data/clintc/ 
citcom/CitcomS-3.0.3/bin/pycitcoms: exit 1
[clintc at akua cookbook9]$

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